Scaffold Ga0209079_10005803

Overview

Basic Information

• Taxon OID: 3300027972
• Scaffold ID: Ga0209079_10005803
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4253
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024535	Metagenome	205	Y
F033362	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209079_100058036	F033362	N/A	MKMIPITQFIEVIKKQGAIGVLALWLAYTHFEVQDVKDRLYNCLDKNEYYNRKPIEERQPILPSVKSDTVAVLENKSRKLAKK
Ga0209079_100058038	F024535	GGA	MAKKKTVKIDTDNFDLNLEKDGTNVKLDIDTKNLDIQVVRDEINKEFNLDGKNIDIHVKKTPEGVEVKVDAKGVLWKAIAKRIVKFVLRRFKVGK