Scaffold Ga0209401_1105250

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1105250
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1160
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F013404	Metagenome	271	Y
F083631	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_11052501	F013404	AGGGGG	MIDIKLENAIQKLDDTFTKQKSIANKLVTEHQKLQQALANMLVNADEDCPKQYRTEHFCRAIDDGYSLLKTI
Ga0209401_11052502	F003803	AGGGGG	MKKDKTLLRFRIYDGDREYTDYAIIDKKQRIAFDDKEIISKFFYDNDVSKEQFLSDGRAVRIESEIPITDVDVKNLESLSMAYLHDFKLEGAV
Ga0209401_11052503	F083631	GGAG	MKKPRLNLVPAVEDANIYQHHFLPEGIFTTSWEDVKNIKDYIKTFNDRKLREEHKLYTSIERPTILENYFKDFIKQEINTRGIGV