Scaffold Ga0209401_1101742

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1101742
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1187
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019099	Metagenome	231	Y
F085340	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_11017423	F019099	GGA	MIIKGKFVKDWDKSQISTGYIPPNKFRIITWDMGRIQSWLLGQKPLSRNIIERIIK
Ga0209401_11017424	F085340	AGGA	MNDQELMQYWRAVKTPNKEVEQKALEFGHAVYFQAYKTARDELEHSFYSGMSRGHDDCKPAMQKALSAMESAYYILKIQPVTPSQEADTLALAIQSVNDALEKLS