Scaffold Ga0209401_1047366

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1047366
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1968
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011646	Metagenome / Metatranscriptome	288	Y
F034906	Metagenome	173	Y
F069714	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_10473661	F034906	AGTAGG	MKNTNRVKTAVDQAVRQRNYRRARDRALARLANDYPYVYRNYLEQEKKVDESMGKKWLDIDGNTSLVNTRTQ
Ga0209401_10473662	F011646	GGCGG	MTNVVELRNGAVKRIIFYEVSDTQDIAVWGGENPSEALKWYRNSPVGSKIWVSEWLINEEDAKEVSSQIEITPLILNTIADCMSRWSK
Ga0209401_10473664	F069714	GAGG	MKIDIKESYMPEYTKVITFECEGEEYLAEVYVGKNCSDYNLYQGNKKLEDKPTWLEKAELDPEFSFLFFIDELAWEYEQRQVSV
Ga0209401_10473665	F006842	AGGAG	MKATPVICGDHLVPISECDCLSYMKEITSSAERLIQLAKEREAMK