Scaffold Ga0209401_1031136

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1031136
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2577
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003456	Metagenome / Metatranscriptome	485	Y
F006653	Metagenome / Metatranscriptome	367	Y
F009331	Metagenome / Metatranscriptome	319	Y
F028460	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_10311363	F009331	AGAAGG	MMCQNCIEGGAENKLGHLKRAAHKHEKCNMKGCVCQHRTGPGYVKRADTKVPLMQIQSP
Ga0209401_10311367	F003456	N/A	MSQYNKTKGSKFETDVMKWLRDKGVSAERLSKAGAKDEGDIVAVIAGETFILELKNRAALALPEFWREAEVEALNYAKARGKGEVPLHYVIVKRRNSGIESAWVIQDLKQWLEEKK
Ga0209401_10311368	F006653	AGGAGG	MSEPLVNKYRDNLRIDALRDAGNVLREEIDALKVDLTNFVGALLQSGIVELVKDEEGNIIYKINKAVLVDESVQQD
Ga0209401_10311369	F028460	N/A	SEYGSPINPPHRRAIHGKVSQLPALILTLGYDPSQGTLKVAAVKNRFGPHTADASNYAQLLVNYAACQISDEDQFGRMLRRDTMAGYQGGYNV