Scaffold Ga0209401_1025596

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1025596
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2927
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004599	Metagenome / Metatranscriptome	431	N
F006539	Metagenome / Metatranscriptome	370	Y
F042333	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_10255964	F042333	GAG	MDGYSTADGFRVYQCLKCCAIGTKNLAEATDTQEPVIRCKQCGSWQFTDQQCHTCELIGA
Ga0209401_10255967	F004599	GGAG	MGFNLDDYEDVATLNKWFIANFPSGRSDIAVISHDPVNGYILVQATLWRDSKDEQPAVSNIAFGSRETYMPNMKKWYVEDTASSSLGRAIILLKGSNKTATKDDMRKVESEPIKNIYGKSGNSQVIEMALRKSFADDAKAASEPTTWSVGDVAEALSTKPKQQECIHGLMILKEGTAKTGKPYYGYVCSAPKGEQCDAKWAVTAANGSWFFREED
Ga0209401_10255969	F006539	GGAG	MIETTAPWIVLYCILGYFIGWGIYSTIKDNAFQSGYWKGRKDGYDMHRRITDTKRDQVFDYDKQN