Scaffold Ga0209401_1008982

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1008982
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5680
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030333	Metagenome	185	Y
F034448	Metagenome	174	Y
F040990	Metagenome	160	Y
F089853	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100898211	F030333	AGGTGG	VAIDRNPELVIPVKTYTHYTECEPWCQVNIGVWNESWWKDYPDMAMAVVVEGPHEDCYWFSNERDALMFRLRFV
Ga0209401_10089824	F089853	N/A	MKIASVKAPSSGDGHVAYRGWTPCIEWCDQYCEGPWLFVSEGVFEFEWDSDYVLFMLRWA
Ga0209401_10089827	F040990	N/A	MNYYYEIDPKYDGTVFGDKWRYWCMYNCSPADNGKMCFKTHDDFVARSIRVWLENANGVYQVHPAWHGHRRVDPHEFTLVKLRAKTIKWWTGE
Ga0209401_10089829	F034448	N/A	MHVNNYTLPRPADSALDQCHTVYINDPAFRMWAMKKYCTENKLSLVWSELVETSDVSAYFDEACAFYFIDARDATMFSLKFK