Scaffold Ga0209401_1008072

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1008072
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6058
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007691	Metagenome / Metatranscriptome	346	Y
F065437	Metagenome / Metatranscriptome	127	Y
F077281	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_10080721	F065437	AGG	MTKKTDTTQERWNMGYYSQLEGATIIKFKGTDPDDFGSRGFPMFVARLANGELVELVLSQDEEGNGGGFMFGLPDYTLPEFRTTKHLTKK
Ga0209401_10080722	F007691	AGGAG	VETINELINEIYEDNYSHLDFEENMGGEACGCNVHQTLNMIAKYAGIKVGE
Ga0209401_10080728	F077281	AGG	MTNEYKAANSKTLAKLIKTAQMLNFNRYPESMPYLSTNGIHVLRLVVVDHQGHTNKDIVHHRALVLAHIGNHVEPIEFLLDIREEDWNNLVDAKAMADSVRELNV