Scaffold Ga0209401_1005920

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1005920
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7327
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006547	Metagenome / Metatranscriptome	370	Y
F006935	Metagenome	361	Y
F013759	Metagenome / Metatranscriptome	268	Y
F014137	Metagenome / Metatranscriptome	265	Y
F017826	Metagenome / Metatranscriptome	238	Y
F019136	Metagenome / Metatranscriptome	231	Y
F022884	Metagenome / Metatranscriptome	212	Y
F031867	Metagenome	181	N
F040624	Metagenome	161	N
F062456	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100592010	F014137	N/A	MLKIKNIQTIIGQEYNEVFNIIGVKEHKQFYEFTLGYDATIKPAVETILLHRKQTDNGMYIMEYNNKTLWLNTNEFDTTDKIIICMQTI
Ga0209401_100592014	F031867	N/A	MQRTIEMIVKNGNKILKNSLLQTKPTRVETHKEQNYLVYEFDNNEL
Ga0209401_100592015	F019136	N/A	MSLTITNYKKLESWSHHYKEFMIGDVIETETEYTFRVGYNKTPYTIVIFRQGTITKEYEIVLRDGLNTVQYCREWIAGRKLKSLELTALIFESLIVKCKPKAQGVNNPYYSTGPF
Ga0209401_100592016	F062456	GGA	MIERKKALSHDDTMDREVAKQFLEEMNWRAIELGGMYDLDLEVNQYKRGCDVEMINYGMDRFENHNHFRIPYRKQKYWSGLETFKDKNDTDRHNKYKEWYIDYIQFLNNDLTELLWYDWMLIRQYRNNIHIDTALLKQWSERESSFITIPYEIGISRIKHFKLENDIWNRQ
Ga0209401_100592018	F017826	N/A	MDKLKRIWNVVLVPTAFFLGAINMWIGETAVGCLFILFATNETINKQ
Ga0209401_100592019	F013759	N/A	MKVELGMSLFSKRETLLGFEITTHNGITASDDALYEQRIVEFSIGIIFAIFTIGFVSKGEKLDTPDMDNMQRAMKAFESEMDK
Ga0209401_10059202	F006935	N/A	MDKRYAKQIIEWAEEAKQTLTIRKEIIIDENVTDEKLGNIIRMMYKAKVETQNEQITKTKENAGL
Ga0209401_10059204	F040624	N/A	MKSEKIMALYKRKKELQEQIIYWEKFQGVNWLGKWGRSVRLELLKEKFEKIEKQISKLKN
Ga0209401_10059206	F006547	AGGA	MKWILILLLPFSISAQTYDTTCQMIYYQKSLIKKGKVELYGYTSYDLWSADESGIGITITIPNKRKKKKHKH
Ga0209401_10059209	F022884	N/A	MLTINNLDKIVRYPIGHTFRVRCMICGHTNYHISLIDGKGQHRDLTLNRMKGRRGNYKLSYGNFLTNLPFSDIHNLDLFCEHIKRLIC