Scaffold Ga0209401_1005264

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1005264
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7835
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003786	Metagenome / Metatranscriptome	468	N
F009808	Metagenome	312	N
F038230	Metagenome	166	N
F051874	Metagenome / Metatranscriptome	143	Y
F061663	Metagenome / Metatranscriptome	131	N
F090393	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100526414	F051874	N/A	MTTLQLIEQKIEISLQAINNLLPEGYYTTNTISSTDFGNSGYILVKKVDAIDYVVDICKIRISDHYATNRGRQDTEIMIDLVRFNIEQLISLVDRKINPSNYEQIEIRTLTNDILESNFGIGKKPFTTLSEPTFLGEITTKKGNIAHKYSWLKEDVRYSWIKKAN
Ga0209401_100526415	F003786	N/A	MSNLTQYQPRNSDEQAIITARSNRIANLDQKNAYKQTLNVISSVFPMYGIDGDLAFYANIAKEIVKTFGQIATNEIEIAFRMFSAETLELDDDVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEIAALRYNVQMEERGRLEREKLYAEFPTMIKEFTGKTWEDVPLYWYDMCLKFDMITYEEGEKRQLWEEAQAIALKEPPESLDLMTIRSHAKIIEQGNMKRAVVIAQKLAVWRKVIKKVK
Ga0209401_100526416	F038230	GGA	MQCKQDRNAYMREYMKKYRATMNEYTYKKIRERENLRLRAKYHAMSREQRQKYIEYQRSYHKLKQFTNEQFNPVPTTQL
Ga0209401_100526419	F061663	N/A	ASTYERLAGVTYPSDKNNYIMTAKDGANCKKLVTWLKKVSASEQAADEMVTMFTTAAWKISDKWLKANFTISNIYSQANNIYTKFMYNNPAAQEKRRQEEIDRLVNEYQP
Ga0209401_10052642	F009808	N/A	MKKNFNNQNFEWLFQDITSSMPKIIFTGIIFTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAIVFIDFLNPSDKRSKYPPRVAAVATVIALLELWFSIQGKSIGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRKRNPPKSKESALKMNATTSQPIKFTMAICFMFVVYVLPAQKNHFMAYNYMSIEKIGGDKLERTFYDTNEEQHYIDTITTDFLTSWNFWDGYSRSHLDNDLFMTYGTQTMKYIKSKQLWYYRGRYYDYKNLLKFLVKYSKKNFVNKKIQW
Ga0209401_10052649	F090393	N/A	MALDRKTSCRVSFYDYEQEQIQSWSITGSARLALLVNTISHEKNKIETNKDEFQSSLDYLIYDLKKFLNTPYTPEENA