Scaffold Ga0209401_1004452

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1004452
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8653
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018483	Metagenome / Metatranscriptome	235	N
F046370	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_10044523	F046370	N/A	MATTIIAQPQVLMPAYNPIKYIIDNTDKNEPGFRYIFSIYPAASNTLIAQYRVLPVFSTGYGEQDISRLMQSLVTWNFTSGQVNESWYQYRIRLGYEYIDNIDYFDTLQDNGGNVRISFTAHGFVAGDQVVIAQTGTGPTNNPALEGLHTVLSATANQFTVNVLFSTITDSTANGNVSYADQRKTQVLDDEIIEDQEVFNGAFSLGIYAQGAFPSADYLGTLNPSFALTSLGNPANPSSATNAAALVADSGFIYYLMCRVYSGVTYTMSYYNTVGDSLFLGPFSHNPADGLYNFQVDPSTSANQNFYVEIVGDNGSEFKYYFQYDNRCAINEDVLYYLDRMGSWQHFAFQLKTYEKGQITREMYNQHVDGQVTDGQWVYSSDAMGSRTYNTNVSNTLDLNTNWMDQYNADRFQELLTSPQVFYFNGTETRACTIDASSFENFRQRNKNLIKQSVTIKLALNTPING
Ga0209401_10044526	F018483	AGGA	MMCLAVEAYIYSKKGVLVKINRIAIISNARQMEMLVYAYAYANGDR