NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1003320

Scaffold Ga0209401_1003320


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1003320 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10173
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (84.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F008808Metagenome327Y
F041080Metagenome / Metatranscriptome160Y
F091587Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209401_100332011F001531AGAAGGVDWSRIERWDYIVVNVASEYHRKFDMVELEDIKQSLYEWFIDHPNKLTEWEAIGHKDAKNLLYRSLRNQALDYCQRWKAKTVGYEKDDLFYYEPELVEALLPAILRVDYSITHKLNLGRTGKPTAPNEGGNLPVMMIEIDYAYWKLNAEDRKLLFFRHAEAMDFKEIANLLSLGTDDAARMRHKRAMRRLINKIGGFRPYRDEDTKDSTETEESPAIAPEE
Ga0209401_100332020F041080GAGGMSTNATILSLAEEIRLIADEISYNAFDTTSEYPKRGTIVKALPEDQQDRFNPQSLWVSLGDGTYKHLNGKKGLVTTHSRLADVTSVVFEA
Ga0209401_100332025F091587AGGAMSYNPYGGQGSIVVTPRKPQATPRRLGTRGARLTDTSHGKAIRRSRNGKVTSNKRVERILPVLDEATQERLARELLLAEREREFRATLPSVHIDAND
Ga0209401_10033208F008808AGCAGGMSDDTEKCPECGEHFDNAFDAIDHILEDDEDFDPALILPNGYRLMIGSLLRCIYRYADEPEQIRKITQSTFLTLFTAETQPSVMKDVVEDMIIDSSMMNLDDELKKLLADGA
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