NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1001957

Scaffold Ga0209401_1001957


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1001957 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13457
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F003304Metagenome494N
F007467Metagenome / Metatranscriptome350Y
F007747Metagenome / Metatranscriptome345Y
F065527Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0209401_100195710F007467N/AMTEKEAWAKFEDGLKDAQSFDEAVAWVKKNKKIVEKLTMIAMIRRFNEDISKANRTWRN
Ga0209401_100195714F002009GGAMTAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDVNGETSIDHLERALVRSLFVLAQIRKEVPRL
Ga0209401_100195716F007747AGGAMKLGVIQFGKSRPAPKAVIVDVTFDDKTETALFRTGLRLLKFDKEAVIEYVIKKSLERKLKK
Ga0209401_100195717F003304N/AMKKGLVTQAFGDDWKKILELTQPRMEAYCKRHKIDFMALEKPLVEPVQYSKSAIGNIMATKGYEQITFVDCDVLIANDCDEIGAEVEMFSAFDEGAFLDRKYEMGKLASAFGARIDPRFYVNTGVFVISSKAVGVLSMPPLGLLPNHFAEQTWMNIMIHLWNVPIDNLDPAYNCMTSVESHFGLDRHKDAFCIHYAGQSNDLVKLGEQIKADDAKLVELGR
Ga0209401_10019578F065527GAGMKAITTITLMAMLMASVMAEDDDEVSIGDFAGGVLGKSAIITGRNTAVTSDGKFIYSNGRGFATSGGYYGANGKQVFGNGKLVVKSGSFFYGSSSSWKNGNSYFDGTKSSWITGRQRISD
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