NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1001285

Scaffold Ga0209401_1001285


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1001285 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16739
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003377Metagenome / Metatranscriptome490Y
F015583Metagenome / Metatranscriptome253Y
F102618Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209401_10012851F102618AGGAMITNESSPAENEYLAAVAGLHEQTVSPAHKTREPAVGDFVSGTTCGRRWSGRVEWVNDRGEICVNTDGSWVYVPIADITH
Ga0209401_100128515F015583GGAGGMIRCLLVLLAALTCIHANADTTVVARRGSVISAQDHAVVIARRGSLVHSSCGQYEGIGTGSTPEQARRNCCFFGKRVIVEEGVAYSPVARRWFAVIRYR
Ga0209401_100128527F003377GGAGMTDAAKDTLYGIIERWGFPTLVAIACGWVLRQDVLLPLVEEHRSFVQSLSETQREISKAVSEQTRLLYALQPRATEQQEN

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