Scaffold Ga0209401_1000932

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1000932
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19795
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (74.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003962	Metagenome / Metatranscriptome	459	Y
F004010	Metagenome / Metatranscriptome	457	Y
F024501	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100093211	F001459	N/A	MRKLKAALAFIRDQEWVNEPKWEDEDEKAWTGFLSTPTGKRLSLILLNLTLRQNGSAVMKKSEALADACGYAKGFRGCVATLESLASQKLNSAVLGYEDGSDETIAN
Ga0209401_100093221	F024501	AGAAGG	MKHPKQLDEVGITESYLRKMAKKEGLSYKKAVQIAMEQWGEYSLKLINKIVAEDIKTK
Ga0209401_100093224	F003962	N/A	VEAYEGQEGRVLNQDREQLKLANRFISLLQKENAQLHGVLRLLGQLVDDMDANCSFEVFEHQWEGLTDEVNRLSGFFESHQKALQLLHDACPEAFDADEVDES
Ga0209401_100093230	F002826	AGG	MQSEAKARLKWGRDILLTAREKLVVERDRASHGHAIDMIQIITMVDAAALICKEIIEESVDSHSKDK
Ga0209401_100093231	F004010	AGGAGG	MPLGKDVSKNMSELAADNRKKGKERGAGGKPRSRQQMIAIALSAAGKSNKSPRKFRMRSG