Scaffold Ga0209401_1000872

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1000872
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20390
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (72.97%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F025739	Metagenome / Metatranscriptome	200	Y
F027777	Metagenome / Metatranscriptome	193	N
F074559	Metagenome	119	N
F081046	Metagenome	114	N
F088509	Metagenome	109	N
F093506	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_10008721	F081046	N/A	KGDVIDLEIWPNKYQEYRFSNKTWTEFVYSHPAINKADPTNILFDKLDDKPAKGLPAEYNMVAPFGISQGHKRDPLQIVVEARKKCGENNFFVLCPPGMEINGLQTYTAPNIPDMARAIRGAGEFWSIDSGQMAIAAGVRKESKVVYFPQTNAPFDKDNIFIWDSVELN
Ga0209401_100087216	F093506	AGGA	MSATIISNISSFDYEPDIQTDNSRDGITVFQFSIVGSFSALNSSFLLDEDVSGVPDQPPGSFRVVRRNMTHIAGDTANGLYRLQVSAEGGTGNNSLFVLETSYQYQKEAVSGIVQVPTIDIAITYICEWLSPTATITTNSQSADVTDVQNRVKALVGNLDVQIIRNKPNRIAPIGTVLYPVYGFGINKDAIIITGSSVENAGGLYRVRASATKGQMQNEFDL
Ga0209401_100087222	F025739	GAG	LLTTAVYEMRKWILGFIATSFLLCGCVTTRPYDLGEVPNQDSITDYIMRWDKLDRNKSTPEEYRQLFGQSLKTISRLVEENERLRKRLDQ
Ga0209401_100087226	F074559	AGG	MKSNPWQKLLQEHIKDKFAPPQPEGYYTREQVSKLWQKSMNTTSRMLNQMLEQKKVEMKRHPFIIARKDHRVIRNLKIFKILPIKHPHK
Ga0209401_100087228	F005846	N/A	MTSFPLPARPQASAVPARHIEFKKDTAIEGKANGWRGLFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDIPNNKLLRFVRLAHHKINSIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPSYCSPAWQKQRIRW
Ga0209401_10008723	F088509	N/A	MTSIERQLEESLATALAGVSGVNIYKSDTEGARLLPSLVIQASIGSEEIIPYSGVFRCPATIIYATRADTTTRTTFDSKFQDILQVMYQSPSLASVLTTATLKVFLANVTSESPEIKSENRTWSKSLSLDISCTSI
Ga0209401_100087231	F027777	AGGA	MSEELPTFWHQEPAKKKLPNETTDEWIVRVFGAFPDTEFDSRNDFRFLNLPKTQKENAEGFGVFDDGQHKQ