Scaffold Ga0209401_1000864

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1000864
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20434
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (78.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009066	Metagenome	323	Y
F015449	Metagenome / Metatranscriptome	254	Y
F031026	Metagenome	183	N
F043823	Metagenome	155	N
F048834	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100086423	F031026	GAG	MLGGRIALLLISAFALCSCATTQTQDGPPPSPDSISYFIYAWDQAERTNPPCPQAYRDLFAESLKALSDSLAETQRERARQ
Ga0209401_100086425	F009066	GGAG	VSPEHEKHLASILSDLLKDVDAKYRKGQEEHGGALWRRPVWKDAWEECLDLCTYLHTLRMQLSVIADLALLGASDESVAASSSRESCRQILAVLEGFPSAVDKK
Ga0209401_100086427	F048834	AGGAGG	VALPTVKDWAVALDAYVSGDREEVVPPGWFTKIEISKQWGKSDVYTNKVLTRMIKAGGAERKVFSIRIKICDRGSKVGHCRRVPHYRLTPAKSRKS
Ga0209401_100086428	F043823	N/A	MKKAKTNLTIDPKVKRNGERMARKSGLSLSAYITTLLVKELAKENRR
Ga0209401_10008648	F015449	GAG	MVDSFWGTTNIKVAAAASAFGAKLRQSDPVTCIVEEGGHRKFTFWFSTGDHQDAKAEMERNWVDMKSDPESPIRYVRAALENRETLLGLMKRAEPILSIRRGSQTLLISERASPELKRAMLKKL