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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027971 Open in IMG/M |
| Scaffold ID | Ga0209401_1000817 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21023 |
| Total Scaffold Genes | 41 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (100.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031023 | Metagenome / Metatranscriptome | 183 | Y |
| F041637 | Metagenome / Metatranscriptome | 159 | Y |
| F082341 | Metagenome | 113 | Y |
| F100534 | Metagenome | 102 | N |
| F101019 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209401_100081717 | F101019 | GGGGG | MRVHSFDDGFDAATAGGAPAGEREMLPDGTHGVTIKEASEGPHKFADNNPGDFLHLTLAPNGSYGFVWVSLGSSAKDRAQAGLLATALGYTPDGWAEADPSELVGRELRITTKQVVLKSGKTRVFVNDYLPAVGAAPEKKPANRLPAQKIAAARGDEAGGGDDIPF |
| Ga0209401_100081724 | F082341 | AGGAG | MASETMVGDREAAGAIAGMIDLYGRRLPERGEAIRGTTAGKRWSGTCCHSDQFRVIVEIDDEVFVTVSPSDIEIE |
| Ga0209401_100081732 | F031023 | GAGG | MILDRKIVSIVLVALALGWWLGSSPSSPINPTPQRPVLQAVGRLARVAARLGLWAALAAEAPPQADGRQLVHAPAVDADGHRVVNHGEGW |
| Ga0209401_100081736 | F041637 | AGG | MTPEQLQSAVLALIAGARLKSAGGLTVSEFGSLVVEVIRLAVAGLDTISTLDGAAKKSWALSCVGTLFDAVADSCVPFAAKPIWWIVRPAVRSLVLAAAGGALEQILTLTRAAAPEPTA |
| Ga0209401_100081737 | F100534 | GGAG | MADSLDGIVSTTTSLTQTQTGTVGSSTRAVSVSSALPLNSVSGPLVDQLWVSNRSLAVGASETLDLLSLADTIQGATGIQTMRQVRLVRIENNETATGPRIVVGPSGTNGWGRVAGEIGPGGELIAVQQTHAWGVTATERGVTIRATGPTGSVSYSIVIAGTATTGPAGY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |