Scaffold Ga0209401_1000675

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1000675
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22991
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070923	Metagenome	122	Y
F072014	Metagenome	121	Y
F078637	Metagenome	116	Y
F082075	Metagenome	113	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_10006752	F078637	GAG	MARGWITVEFLGGPLDGALRPVQVGVEVFYLANGLVIHAYVLDEIHEGHYVRQVMRHFECLNVSHWFA
Ga0209401_100067524	F082075	GGA	MPHVIIRFRLPEEQPEFDAAMQGRDAKAVIWAVDQHCRSILKHGEPSEETRQQIEQIREMLRESPGLLDD
Ga0209401_100067525	F102439	N/A	MGDVQRSLLGDDELPPPKGKRRRMPERLSPQLRKWLTQLARVGARITWTIELLYDPSKGGQGELCDRATAGDHTLVLDTVREVEHRAASLADDIEVFMTPPQKLPAEPGHPLRVEAMARRQAAKMHIFD
Ga0209401_100067526	F070923	AGGAGG	VSDAPAGMLPHLRSRLRAEVGPRAVKAGRAFDEFVDAVCRCWNCEHWTKLARAQPESEMAAVRDAKVLIAKVREDVEAMWGDSPELKSLYSDVGTDAVESFARLWFESMANRTWMRQACREARKT
Ga0209401_10006757	F072014	GGCGG	MSFVHLPPPSDVVQALMDRAWDDDISDDDRILLETAAKTLEVTLDRCIRLASVIERTEVG