Scaffold Ga0209401_1000632

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1000632
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23693
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (83.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026483	Metagenome / Metatranscriptome	197	Y
F027776	Metagenome	193	Y
F051705	Metagenome	143	N
F056414	Metagenome	137	Y
F079788	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100063221	F026483	AGGAG	MSIFIPVLYICMNGHCEFFQQHAYYTDRQKCIEVVVAKQGEFAKMGAVVDSTCIELVVQKRGLYES
Ga0209401_10006325	F056414	AGGAG	MKLTNYQRSQLKAAACFGCGQIDKVAASLQRENPEAFLRESELADRDFYHQPMAVHRSYVERFLPRRRELDNEQRQVMEQNHYLTTTYQIGVGA
Ga0209401_10006326	F027776	GGTGG	MTPLEIEIKKTVFAHLPAVGNVGLISREELATMLHTACTDAALAGWARGAETAQKRLDQELEILRQELKSIQIELDYAKAN
Ga0209401_10006327	F079788	GGAG	MDTDDEIESWASIAIGLIASIFFFIGLASVVAAACMAWGYYTYEPICGSIAALFTQECK
Ga0209401_10006329	F051705	GAGG	MQITATFQDEQEAIKAIHSERAWQTLYEINHVLRQNRKHGLPFEQAVSEIQASVNDALALIPD