Scaffold Ga0209401_1000424

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1000424
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28831
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (76.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F003150	Metagenome / Metatranscriptome	504	Y
F024029	Metagenome	207	Y
F036197	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100042425	F003150	AGCAG	MSDPFGITDGVKQVTKSINESVKASQELSKAIDGVLEVADKAAKERADSRKKARQVNPDTATIIEAVDEWQQLLIARQSEAKIQEQITKKYGSHAWDEIQGIKARKQWEERQDRYLEQHDRRVMKSVMLLCYIFAGWIAYELTWGMWR
Ga0209401_100042426	F000340	GAG	MNIQDILKAVLPIVVACLAWLLGQVSDFSTRLTKIEGQMPALITKENVPTDSPLSAEARHRLKEEVYKDIHQLQVKVQLLEEREKGRK
Ga0209401_100042430	F024029	AGG	MNNEHIWTASGTNIEERWAKKYGWIRPSELLEYQAKYKYFQELPLRRLDDIAKIEYEMALKKARVARVR
Ga0209401_10004249	F036197	N/A	MPLIYLEHPDHGNKVATMEQEAEFDEQNGWVRYTHDTPSISEKVETVEEATEVAAPVNTLEVKRRRKTAQ