Scaffold Ga0209401_1000164

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1000164
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45092
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (78.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000273	Metagenome / Metatranscriptome	1401	Y
F005025	Metagenome / Metatranscriptome	414	Y
F021992	Metagenome / Metatranscriptome	216	Y
F043751	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100016414	F043751	GGA	MKHCWPKKLYYVCCRWIEYPKGGGRNFIATKHLGRARYYAKRLKLKVRQIDVREKGKKTYVLQGSWL
Ga0209401_100016434	F000273	AGGA	MTEKLEAKSHFIEKVAFAVFPILFTCVVYLMSALDKLTHDVTVLNAKISLVVTSDNKQAANSGAELAREKLRQDLEKQINENRELIHVNRERIVILEERMKK
Ga0209401_100016448	F005025	AGGA	MNRKEVKGIADVESAKAVKGHEKKMHGMKKGGPTSLDRKKYGKNMSRAMNQR
Ga0209401_100016457	F021992	AGTAGG	MQQTDVKSTHLNSSGSVFAGRARIKGIALCATASTAGTLILRDGGSGGANVLELDIPSNSNPNSFYLLIPGEGVLCATNIYASITGLASVTVFYG