Scaffold Ga0209401_1000106

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1000106
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56005
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (85.53%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005294	Metagenome	405	Y
F039525	Metagenome	163	Y
F042295	Metagenome	158	Y
F043830	Metagenome	155	N
F047558	Metagenome	149	N
F063386	Metagenome	129	N
F082375	Metagenome	113	N
F085338	Metagenome	111	Y
F090290	Metagenome	108	Y
F091924	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100010610	F039525	GGAGG	MSETNMNPYVKGFNAGVDCVLTEIERLEKIAPINLEQLLKHLDPQRDQKTAQTPDKGVS
Ga0209401_100010615	F091924	GGAG	MTEQIWEADWISENPELANKAITELHTQVQELESKLKHANNKVAKLDAQNREFKLTIKDMDRRIMKGLKD
Ga0209401_100010645	F047558	GAG	MVTKKVPAKVAPVKRRTATPKVEVASKPEAKKDDSTVGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRTVILNAITSSSHQPQLKEIKVLEHVAERLKKDLEAETVLVHKVALVVNSRVTLLSYGPKGRDTTLDGYNSTLFGKDATRNAAVIAMMNGEVHCDKLVASGKTSDWEEKQGVGFICRGSIPPEMGAFEGYISVGFTKEPQDLGAVKTRINLASTEMAK
Ga0209401_100010651	F005294	GAG	MATILSVSQVYDPRFHTFVSWASLMCELYSVQNLAIPDANTDWKEWASGLKAIDVFTNEGIPGPYIYDDWHEWAEALVNAVNPAVN
Ga0209401_100010656	F063386	N/A	MILMKIDEKGELQADWEAIERFTKCFDKGCKSEQAYKAKLFSLVLEHGYDAAMDDVEYERKEILFMLCTPAGNA
Ga0209401_100010657	F082375	GAG	MTPKDFVTELFGEGWKPSQLPSFLDAIKGWSEDSQRYYAVRDFAKKLEWAIDPRDRRECHEFDDLVDSKRFEHDLDEN
Ga0209401_100010658	F043830	N/A	MNPYLNTDDIKQAFFKINLEDNYSFLEEDLQKLADAFIMAAMPAIVKTERDMCIKFVNTINTNVARALGDYRENL
Ga0209401_100010667	F090290	AGG	VLECLHVDTTVKENQLDKQLPYTTKSGLQIGCMYSPPTENHMSHDDEIIQMALLNIEPEFSQRRIAGWVAYALFLVVLYTALVVWEI
Ga0209401_100010670	F042295	GGA	MALNNFTKFNKTEAVDDSPNTLECYANGCPMAGGISTGGRWVCAYHHQAFSDEWPRVTEALRDAEAIRLAITEVMKIDMISWGANTGGYPPKWQEFAALFDNYPELQPNEHEKIRKTKYEYRLRNELAIRAGLAKRKA
Ga0209401_100010671	F085338	GAGG	MTKSDAQKILDEIRGGFGHAYTETCTLECLNLTGDLGAHETVRSSGVDESVREEGYRARLRQRAIMVARSKE