Scaffold Ga0209401_1000055

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1000055
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81486
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 81 (85.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004431	Metagenome / Metatranscriptome	438	Y
F023341	Metagenome / Metatranscriptome	210	Y
F035307	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_10000551	F004431	AGGA	MTITYSLWDGAQLLGVDFTANSADEMNKVVADLQKVSTNVVA
Ga0209401_100005543	F035307	GGA	LDNSSLLVTAASGLQKGMAGTKGTVLRDSTVAQISAAIYYHAQVVSKLTTNKQFQKKFQSVIFKQIEEDFGLYVDSQSRMNPKSLHHVYEWKKTGNKNSRLFKLKVLSTDGLSFKITSSFLPSKSAVPNQFGKRRHVFINKASVMEAGIPLVIRPKFAERLVFETSTGVVYMPKGASVTVTRPGGGKATGRFQIAYAQFFTGNLVNTAIKRSGFQQLFNSSLTKAMRVPSDVRKVKYSFNANTLNMNAESAIASAFGGAV
Ga0209401_100005595	F023341	AGGA	MPVYEYKCSYDDAHPTMSTHRSITESDPGYSCVECDSQMTRHFTPFGIQFKGNGFYKTD