Scaffold Ga0247837_1025899

Overview

Basic Information

• Taxon OID: 3300027970
• Scaffold ID: Ga0247837_1025899
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14.5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 4473
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F011756	Metagenome / Metatranscriptome	287	Y
F024719	Metagenome / Metatranscriptome	204	Y
F029021	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247837_10258991	F024719	GAGG	VSEVIQLPRRGKIAVVFYEVSDPQGIAIWGGESPQEALNWYRRSPTGSKIWVSQYEADEEDAKLVLDLIEITPIVLATILD
Ga0247837_102589910	F006618	AGGAG	MSKMKQHLEKQINITGKNHEETGWKRYLCFNYQGNEYELTLFWEEFNGYDTYWRSPDKAPAWVVEWDSEAHEGMSFEHYLDDLTWEDK
Ga0247837_10258993	F011756	GGAG	MAEPRYLMGDEAALAEYADELINCNKCKKEFDRIEYRSDTCSECEDKEVKRERERV
Ga0247837_10258994	F029021	AGGAG	MNICQFCGWEIARPDWYHRYNGKLICDNCVMDTMSERERERTNG