NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209191_1026768

Scaffold Ga0209191_1026768


Overview

Basic Information
Taxon OID3300027969 Open in IMG/M
Scaffold IDGa0209191_1026768 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2804
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001923Metagenome / Metatranscriptome617Y
F003583Metagenome / Metatranscriptome478Y
F003714Metagenome / Metatranscriptome472Y
F005588Metagenome / Metatranscriptome395Y
F019449Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0209191_10267684F005588N/AMPDPSHRPYKPMTIIRPNSKPPFWWLVPWAYARTLHMSANALKAYADRLEDMLDLQRRTIAKQSADIKLLQARVRDQDDAIIKGTAINPDAYPHE
Ga0209191_10267685F003714N/AMPNANHPYTDTVTFAGRVLPLKRPMASFAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDMTGTTWVNVRRRGPYSSRNA
Ga0209191_10267687F003583AGGMAKAKPQLKESGSANLLLAVCLLTGFAGLSAFASAYIAGYVLDILQSRDALVMIVTDAGIKSDSVSVEQGLSAATIALKAVRDLGWALAVGCLGVGVAVFLRSRRQKAS
Ga0209191_10267688F001923N/AMSPPPPPIDPESFPKELKDGVIASILGGLAMTARLLLSTEPVSLGWVVRRVLAAAITAALVGYAITDHIQSPGLKMAVVGASGYTAPECLDYLMKYIKARGEKEVAKVTGKPNGKSKAPVKGKRKR
Ga0209191_10267689F019449N/AMTTEFFTTIVVPGIASAAYLSASIACFCVGRPALGTMWACYSLGNIMLLLTVLRK
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Institute for Fundamental Biomedical Research
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