Scaffold Ga0209191_1006541

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1006541
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6459
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004641	Metagenome / Metatranscriptome	429	Y
F014494	Metagenome / Metatranscriptome	262	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_10065412	F014494	GGGGG	MTSKVFECETCGAEGKIVIKGTDHRYEDIVYCPVCSADIYEEEEFDEDE
Ga0209191_10065416	F004641	AGGAG	MAEENKEGAKGAFIEKLLFALLPLLIGSTGYLIQALGSLQHDVTILNQKVSLVVTTDNKQASNSGAELAREKLRQDLEKEIQKNRDAIMENRQHIAVIEDRMGMKKIGSMKE