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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027969 Open in IMG/M |
| Scaffold ID | Ga0209191_1005154 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7458 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (64.71%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011394 | Metagenome / Metatranscriptome | 291 | Y |
| F066776 | Metagenome / Metatranscriptome | 126 | Y |
| F072349 | Metagenome / Metatranscriptome | 121 | Y |
| F105192 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209191_10051543 | F105192 | N/A | MKMFSIYQILITLFAASISGLFTAYINSRKAKKEKAAQAADKAHDQLLLEIKDLQIKLYKLEKDLNEWKDKYFEALQELIKVKAELEGTMLKLTHIEMHSNED |
| Ga0209191_10051544 | F072349 | AGG | MDKVLCYSCNKSKNALAAKKSALLAINLLLCQGCTDNKLEPRWIVILAGRQYGAEHVKEHIAKKKYIGLDITASELLI |
| Ga0209191_10051546 | F011394 | AGGA | MFIDKNKDHFKYGINEWTGEPNKPVFYNKEMALKIRELKKPVNNLEMDIVKYPEFLAIRLYEDNFSQYDGSIKMQVIEYVEMVKRILETYGVRVELEGKPGGNRR |
| Ga0209191_10051548 | F066776 | AGG | LLHLTEKGVEVFIKRSQSKTQESFWNNYDLVIWKKDNGGYTSVNGMYRKDAWGKVEKFSISQEGTWKLSKKYVKHFK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |