Scaffold Ga0209191_1004598

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1004598
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7979
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y
F024113	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_10045983	F014737	GAG	MTTINAVTGSQINHAEFVKLTVGNAATVYTFCNAAAPITVGGITFANLGALLSVGDVQRDIKATSDDMTIALTGIDPSNVGIILGNDIKGSLVEVWRGFFNSNNQIITTPTTQFFKRYQGIINSVSITEDFNSEARTRIATCSISCSSMRRILENRLSGVKTNQNNWQFIYTGDTSMNRVAQISNTYFDFGSPPMTQTQASETTVTMDDSSTGGD
Ga0209191_10045984	F023109	GGTGG	MIRQATRYDIPRLLEIVEAYAYENPIKKLGEPCNHFPRYVEELLFSIIQGRGFIFVDLHLRGAIVAYKTSNIWSPKVKELNELLWWVEPEYRNGTVGGRLWKAFDERAKEMLKAGDVDFVCTSISANGPLIDYTRRGYKALGATFVRE
Ga0209191_10045987	F024113	GGA	MAIFNKNTLAQVSGFDNPILAGELVWNQKTYWNLTFTNSATGLPVNLTGATLDAQIVRRELSNIIDTRNGLTFDIADYNPAPAAIPLTITNIVAAAGSCTLVIDASAWSLMSNDPELEINAVDPVGYSGRVKVSFPVSGSTPADDSIIFLLFLVRSDGVIVL