Scaffold Ga0209191_1004207

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1004207
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8372
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011761	Metagenome / Metatranscriptome	287	Y
F026558	Metagenome	197	Y
F040626	Metagenome	161	Y
F065543	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_100420711	F040626	N/A	MVLILTIDGLGKRYGMLPSEVLERSNTFDLYIMDAAMTFESYHHKKSMNNGREPIPDYTTDELQNIMDKVRGE
Ga0209191_10042072	F026558	GAG	MTIKADLLKRNAIYDGIYNQMLSYQYAYLGGLPFKMLVRKKRPSEDSTLYNDLVTNTIAQPICRYIVDTINDVLFEPGIKRNVQFCTTTGQMIDPKNSEWSDLFLLDADLTNRSLTSFMESVGDLTSIYGHCWVAVDMPQQSEGNLGRPYVCAINPLDVWDWEFDYYGGKPMLKYVKVKEMEDEDCYYIKCYHLGDATTPSYWQSYEVNKGPGQMNEPAELIGEGTYPPGMSIPLFIAYGRRDPRTIDLGISDIDSAVDAQREHYKMECEKYTALQFAHTIIRADKGVSVPVHAGAIVRANEGQIEAIPVDTGDVDKIIKSQQDILEQIEALTGLGGLRTSKNQIASGVAIIEERKQLHRTAKSKARLMEVTEEMIFTFAARFMEMRWAGEVSYNTDYEAHDTNYRMAVMRSAKDLVGDNPMIQSLITKEIIGMLAPETEIPEYQEAYIKTVQDPDLRNLMMETDEAVLSRDLYPSMIPEHEMFGEDDNEDGKKQAEQDNAMGEADNTSLLGGAGTPVTNVGMTYYTQQVAPVLLNTMSIGR
Ga0209191_10042074	F065543	AGCAG	LSRKEQALREKELDSDIQRAMGEKFDSDLLDYALNKVKSNIQWNNDGTYQITDSKGRERYGSDGNPLSIQGLVNEVAAGNPKLLKQSNLNSGSGLRPGQGSFTGASDEAVPDYSRDPAAFNAWANKNGLGKGVGLKGLGVTATVSSASRKVL
Ga0209191_10042075	F011761	AGGA	MAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVTPTQGQTFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTAAFEQFKVSPGNTYYATSADGFDRVLQLGAMEVIGATNTSGTWTPGFTCNSILDLVRLVKQNFKVARMPGTPVIVLDSNGDAQVQNAYTGNQVGSSLNRLLAELTGGAVSQSGGSNLSALGNELLSTGKIESVYGCMVMFTTFLQSASRTVVGQASLPVLVGAYFGDSALFTVMKEGLQIKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINILQE