NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209191_1000348

Scaffold Ga0209191_1000348


Overview

Basic Information
Taxon OID3300027969 Open in IMG/M
Scaffold IDGa0209191_1000348 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36741
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (87.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001774Metagenome / Metatranscriptome636Y
F014955Metagenome258Y
F058001Metagenome / Metatranscriptome135N
F077035Metagenome117N
F082335Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209191_100034816F001774AGGAGMALQLNLESTQFGVPAPQAYARITNFFGTKDQIQVQVAIYYNEDARHGNMATVKENAHYIAIEDLKGDLIPAIYEVLKTFSDYEGAIDA
Ga0209191_100034823F082335AGGAMAQVIIFTNENGGVSVTIPTGELPIEEVKIKDTPEGSIIVDSDSLPTEYFDAWELVNGQVVINETKKQAIINAKQAPIDAKASALSKLAALGLTQDEVKALVG
Ga0209191_100034848F058001GGAGMTEKKDPNLLGMVAVSAYKDGTYSLSSSFDLNETYELLKDAVLDIEDGTLEDSIDYHNESLH
Ga0209191_100034850F014955AGGMIEHWIVGATGVGYLVVGMLQLSKGSIPNALIWIGYAAAQVGLWMNIK
Ga0209191_100034854F077035AGGAMKDIVEAAREYAKQDEYSVTRNYINALCLEIDRLRTLNKDVFGRIQDNTEIYADAERYRWLRSASWDVDTSLVAPSVIACNGDMSEWRWMIGNEIDVAVDKFIAEGK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.