Scaffold Ga0209191_1000313

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1000313
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38084
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (67.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001957	Metagenome / Metatranscriptome	611	Y
F009462	Metagenome / Metatranscriptome	317	Y
F017302	Metagenome / Metatranscriptome	241	Y
F043407	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_100031312	F001957	AGGA	MNSVDMANNLIFRAKNLTEFTVTTEVPDDFRFNGEIPFDMQIKDSIIIANVWAVDFNEAAKRLDDFLGTCK
Ga0209191_100031320	F009462	AGGAG	MELHESVRDTYKKIVIRNDIGFRLTLTKHEVSKPTGLFSVNMIQESLKTDGTISDSQTYNFFMTKEELQALASGLTA
Ga0209191_100031321	F043407	GGA	MSNTSKNVVSNGLVGSTVSVGYGATPPTHNLPGYVGASQPLTIGQVYTTNNTSLGGGSSGQFLTSGSNGTGWTNLADNVLVAKNNPPELEVKGRMILNGRDVEERLNTIEKVLQIPERDAILERKHPKLKKLHDEYIKELSKYRMWQAIKGDE
Ga0209191_100031352	F017302	GAG	MKIALIIASIALVGCATNPEVQKSVSKDQTMDKMAKAALINEMLTSPDPHVRSKGAAIAEKFVIEPKKNIFGF