Scaffold Ga0209191_1000058

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1000058
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90493
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (63.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052595	Metagenome	142	Y
F061856	Metagenome / Metatranscriptome	131	Y
F101169	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_100005817	F061856	GAGG	MDATFNLTRSKVRTMHNNNSYVSRAMININDIKYDLLKISEMYDGVLQDGLGHIAADMFCQYLQDMCDQRWMHSFEITEIVLKEHSYTYDINIQITNDRTPKKLKIHVGLYKSAWPSFASTMKNTETGYVAQ
Ga0209191_100005834	F101169	AGG	MKNQQLISLNFWESKQLEYWLEDNFPDCRIRSLYDTWTAPEDSELYAIEGNITLDLECLLKLKYSDRLKNSNAGIRHGQN
Ga0209191_100005837	F052595	N/A	MKAQPPAQGIMFDGDYGNCQAYTIACDCHSGDHQVHMWIELTGDDDLKDIEMTFYVNTTTPFWREGFSRIKSAWDILINGYREDQHTLILNKQAALNVASTINRVVKELEEKKNGSST