Scaffold Ga0209191_1000031

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1000031
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 114735
• Total Scaffold Genes: 193
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 113 (58.55%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001483	Metagenome / Metatranscriptome	686	Y
F002869	Metagenome / Metatranscriptome	524	Y
F006112	Metagenome / Metatranscriptome	381	Y
F006506	Metagenome / Metatranscriptome	371	Y
F053806	Metagenome / Metatranscriptome	140	Y
F054873	Metagenome	139	Y
F064710	Metagenome	128	Y
F068839	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_1000031147	F054873	GAGG	MRAREFTINVPITIKINGDGDPEIDMPGADDPKDPSELDPDPVMVPPLQQDVELKKAEAGKVSPVINNLTQDETEPEEKQNPMFR
Ga0209191_1000031152	F006506	N/A	MLAVVGLTGCASIVDMIPSKWDANQAKVITDIQVQTNHFDCRGDQAQQLKSLALNVEWFDTYAKTKPTKDIAKLTGTITNTVNEYQDRLKTGPVSPMYCDIKIKIIKQQADVLAKTTQGR
Ga0209191_1000031173	F002869	GGAG	MNNEITTAMLDRTIQWCEQNTLWGKGSAIQRMQDFYFEQTRTSVNEDWPESFTLQELATALGEDPVRYRIYYSRDNLTLRLFVFRPHCVWDEQKTMLDLGFVVAQDGDTDNIPNQPAEGVEE
Ga0209191_1000031189	F064710	AGGA	MSETITTKDKLTSLMLQMQDIIMEDYEDNEDIQNAFNALASAFDYYIED
Ga0209191_1000031191	F006112	AGGAG	MKQDYTMYIWKADKRTKSGERLISTTVWTDRTAEGMKREINGLYWLYLPKDGYRFECVPTMKTVTNLMSGAQIQIPHDTPRACDPSSELYWSM
Ga0209191_1000031193	F053806	AGGAG	MRYYDELAVYERNGFDIIVDKSYEDMDPKDCFDDECFNIKEMYSDIECGNLDWFMLRVRVMVENIELSSEFLGGCLYKDPREVLTDGTA
Ga0209191_100003181	F068839	AGGAG	MKLTSFIFVVAVFASACVSAWTPSAEEVALSAKEDARELALFKLLTK
Ga0209191_100003183	F001483	GAGG	MDKLKDFFFGLLTYIGESPFRLFTVVFLCLFTFLGWVAYSEKDAFMASYRAQQAMPKMNGKYEEAYNFLIKHTDIELVSIMEVNTLSNTRKIAFLATRNGGKIKDHNGLDVGLFSKNYDNNNDVIGLMSGKIPCSPYTKPQSLIGFTYKDNGVNYMCRISVPAEPGVFIGQISVGWKEQPTDVEAAQTALIIASSLLFKK