Scaffold Ga0209191_1000008

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1000008
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 177545
• Total Scaffold Genes: 187
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (8.02%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002045	Metagenome / Metatranscriptome	599	Y
F002779	Metagenome / Metatranscriptome	530	Y
F006142	Metagenome / Metatranscriptome	380	Y
F006895	Metagenome / Metatranscriptome	362	Y
F007365	Metagenome / Metatranscriptome	352	Y
F017303	Metagenome / Metatranscriptome	241	Y
F032658	Metagenome / Metatranscriptome	179	Y
F087203	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_1000008109	F032658	N/A	MKNVKQFNKFDLIKEESSPRLPVDEKYWLRKGKEGKNVALYTHDDMDGIFSAIEVKKYLLNKGFTIVKYGILNYTEGWKYTTLDPKLINVVLDFASMPGDERDDMIDYYLDHHGLFNEDDLEKYKKSPVQKKKTDSGYEAVCQALGVPQDSLQLDVIDMIDAAKYDEYEVPWQRLLDFNLSEIKKSKKRRLEFGAAFNQFLKRSDTKTLISVIQNCADASIYSIFNVMKKVYPEHNAIMGGPKRGHKKDFIEDSQWRLGEMQKKTRGSMSSKKTYNTQTEFTNQFKNGQYLQMDGYQKIGNLVFVPTGTWANALRARVIVEKDFADGVLDSEPNFILLQYGSTLQVCAYKKINTIENLPTLKGSKVVDDLGKYMTELLKNFQKHLGYHNPDTTLGQDEITVSGGHGGIGSISNIYGKSGEKTGSEDDKIVELTLYDGLKYVDMFKNKIISDLSGVPFNLSLKWSEPAEHFNPKSPDMDNKVIATKDVTKLDKQGNLIKSFENFKSR
Ga0209191_1000008112	F002045	N/A	MEFFCVYCKTRKKFDKFVKVNAIKNKYIIDINKIISEEEVDFTDDKTYLKILIFNKIQQAIDKKKDIYYIPDFDNEFSIEKLLNLKKILGENNFNVLIFYNEFRRNPEVMDDVFSNLSKFSNSQIIRDY
Ga0209191_1000008168	F087203	N/A	MILSREINVKITESNYNYYDDLGYDVYISEEIIIPVELLPKGSHYKIKCKCDSCGIEKEVIYKNYLKYDNDWGDYYCRKCSEVKRKETLRKNFGVDYPIQNKKVLEKMKNTLVQKYGVDNISKNKKKLNNE
Ga0209191_100000818	F007365	N/A	MSSLKEFSIREYISKIDFVNDDWKISQIKEDMRRFLGEEPGIDVIYKKDVMVNEFSGEAKEFVDVDKIQIVFTDTDDKFKKIEFVVGQKL
Ga0209191_1000008181	F002779	N/A	MKNLKLELFNFKKDLSLDQEEISTIVEGHMNACNQHSEKTIITSLNERLKPYTYDKGVKVLLEGLNDDMAAFELLYELKNLYGVLNTRNQGELYRQPINVLLQTINLESDQDRMSKILNELAIYDWVPEIKVFVHNLTKSPEKRSNLLSGGSGESIFTVVEQVEEGHVALVRDSWFLLTENSIEKTLLENHIKDETALRSLRTLETAMKYSTVTESRINFRISEYLTIGLSVGKKSGLFINDDELNEETTLESLFNSPIIPIVNKNFYPVLLETSKNLDKFVELDVVKRVNNLVNPYLEVFAFNYKNNTFVYRCDERYGNSFFKYESALELVNEVRNELNYDLTYFYENKLSKELIVKRKLEDKEREISLKLEDVEFNIDKVKGSLKMIGESEVLTTALSNLEKRQANLSTELSAVKELQYKERIKG
Ga0209191_1000008182	F006895	N/A	MIGDRFNFEDVFFRDLTVCVLDTLEGQVKWVNRFTSGDKFVEVPFYYSMTGDERFLLDTFTDDIVSGDSTGNGRYLELNTDIIPRGHLTMKSFAIRSDEFANPNVWLRTVVENEVEIKKVLGRIRAVPVTVSYDLVITLSSEIDSFKCSQAIMDTLWIYKFMYFEHNFMNIDAVILMPDSNSIEMTRDKNLTSDNSIKMTVSFEVQTYYPAFRRDRVDFPGYTKENGGMSDMNGYTLEGGYSDFFNNVRGGSTAGEPNSGFFVTPKRTRWFNNILRAREQSSRRYDNPNGDLGNNKK
Ga0209191_100000873	F006142	N/A	MKRQNKLILEFTEFNLQRMNSDSVQASTHVDDPSLSINAFDKNQDMIRQAMSRINDIMYNLKGTNAYKALRSKLALEEQDIKRLKVLRIVKSTSLKYDIYIAFTIGEEEYWGVLEDMMSGSPDFTSEVFKDADLYQPKEWIIKIKGLIVKTLKTWLKPDPGMYRLLNDEVLCYSVETGKQLRMEKGIEIELIRSHNDKIVIKHNSDIYNLVGDNYVYFNWWFEKLEE
Ga0209191_100000877	F017303	N/A	MSMIIKNQQLTNDTIGALNTLIELDINATIAFRLTRIIKELSSIVEDKLKMEKKILDKWVEKGEDGNPVVPTGQDGNPIEGTVNITNVDEFTKEMTQLMEIETEIPFQKIDFEDLGLTTAKVKDLIKLEFLFN