NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209738_10274188

Scaffold Ga0209738_10274188


Overview

Basic Information
Taxon OID3300027966 Open in IMG/M
Scaffold IDGa0209738_10274188 Open in IMG/M
Source Dataset NameNasutitermes corniger P5 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)863
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000452Metagenome1121Y
F039386Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209738_102741881F039386N/AMQQFIKLLLFLILNEGQHVSGDTPPIIRSLKLHQQPLVLHTWKVVGRA
Ga0209738_102741882F000452GGAVSLVAILLPLRISQEQGVRKETKNNSGFETKHQGSSGSNFSHHAATSDAELPETIGGMC

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