NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209062_1000706

Scaffold Ga0209062_1000706


Overview

Basic Information
Taxon OID3300027965 Open in IMG/M
Scaffold IDGa0209062_1000706 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85020
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (90.12%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005419Metagenome / Metatranscriptome401Y
F031402Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0209062_100070632F005419AGGAGGMVPAGVTETVGEGKDSQASRVSRETRKPRMGQANGVEGQRFFLAKPGGTHGVPEFSKEFPGEAEAIVESLKTGLSYFAVSEWRGVADFSGRKPQLSREAVRVAPKVG
Ga0209062_10007066F031402AGGAMKLADIPPGSDIAYRCAAKQIAEQVEFELETCRRLLGTEPEKVLELLANTADWSVFLDDEEL

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