Scaffold Ga0209062_1000011

Overview

Basic Information

• Taxon OID: 3300027965
• Scaffold ID: Ga0209062_1000011
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 886909
• Total Scaffold Genes: 827
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 498 (60.22%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006317	Metagenome / Metatranscriptome	376	Y
F019162	Metagenome / Metatranscriptome	231	Y
F025048	Metagenome	203	Y
F030458	Metagenome	185	Y
F031889	Metagenome / Metatranscriptome	181	Y
F041367	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209062_100001110	F041367	GAG	LCDGGPDGARGCPQANDVTCTKCGRVHTVEDANAPGACPQCGGWQFTVNRCTHCKLDDLDYARTHSNAGRLFERLLELEFDAAHFSIPWSDVTAEEVRGLQILKEERDRYQREQMEKRNGVHG
Ga0209062_100001111	F030458	GGAG	MAFTAKITRARFVLGPFTSEEMLAIGNVLRDSIAARIGRGMNVTDAPAKALKPGRNGRRGYPDYKKARGLQPIRDWFWTGRTLRSLKVKSASENQAVIGFVDPNADRIAHVNNLRAKQFGVSLKDRQALGAAVLTTLRKARVVRVARAA
Ga0209062_1000011120	F019162	N/A	MDLRFIAAMCCYAILAILAGFTLSGNIRLVTWIILGGIALKTCLVVWKRRTE
Ga0209062_1000011332	F006317	N/A	MQTTEKPPKRIGNLCVASFALVLAGLAACSSAPPKREAAAPDKIQGKAQIVLTETSALDASMNAGGPSVYLVNGVTRYRLFFNTPFEVVPGKEYIAEGVHAQKAIDAIGDPDQGKNGYPLESSCSSVVSAAWPGLAMDLSSSRAKSLHDKVKRFPGRAVFLVTKIEPATSPSDTAKQNRDAPEAEKEPAEVSVPADKQRTLLVEGPTVLSAPLWEPSGGTARCKVIIDEEGKIAELNSGAQLCETVPWSQFRYKPAMKGGHPARVNTEVEVRFDPRK
Ga0209062_10000116	F025048	GAG	MLNPAPITDAIAEVLLSIPELNAAMNGRITAFHYRLGQEYRLAEAVYKMAAPSVLVVWEGTRGGNFDGQTIWKHRWGIYYRMGNAAGVAEPVGYEDLWWIICNRPPGGNGPNIRQMQLYPGLDIMDTPSIDHELDEDLIDRFKGVFVIPEIGDN
Ga0209062_10000119	F031889	GGCGG	MRKDTMYGNIPTEGITIRVPNPPKTAQLRLPTNDEILDRLDQQKSIRRTIGRRKSQTEFVPNTKADLDLFNRIRLDKDGPEFDEYEAGNAISKLTFCEVTDCERAGDQYRITLKTPFGSTVHSLKIPTQRDITVYRRSVVSSTDLPHGQEELRYRIEPAVALYDSVVTGIEGYTDAFKPTDVPPHHKSAVVVELVQAIDDLDPALDPNS