Scaffold Ga0209400_1076816

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1076816
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1623
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013404	Metagenome	271	Y
F017612	Metagenome	239	N
F029676	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_10768162	F017612	GGAGG	MSIPDTDMHIGDLYEETLEKYSSGQLKKDGLIMLPEEALQHFINRAREEGFTDNMIENSAEELLYDLEDVEENKYKQYLEEQE
Ga0209400_10768166	F029676	N/A	MGHLNKTFYNYMTTQDAWDEYLGLLKDDDTFADIWKDTENDFDEWCEAHDIVLVDTQERANQLEEAQLE
Ga0209400_10768167	F013404	GGAGG	MTTIINAVKKLDETIARQKSIANKLVEEHKQLQEALAIVCSNADEDCPLEYRTEHFRSAITDGYDLLKKVGYFKNKKRVNKWDI