Scaffold Ga0209400_1030865

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1030865
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2983
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001617	Metagenome	662	Y
F005322	Metagenome / Metatranscriptome	404	Y
F018509	Metagenome / Metatranscriptome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_103086510	F001617	N/A	ILNTKQVYTEFRKARDMSLNRDPIRMAKALDSFSTNKEYEKHVIEVIQRLRNESK
Ga0209400_10308654	F018509	N/A	MSGKIICPKCNGNGYVNSFNHDDRKKVPIDCDYCNNQGEVDITEDVIKDLEQIKSVN
Ga0209400_10308655	F005322	GAG	MASFLNNIEFDEVRMSPEQKLWRAVFMQALQDAFGICTIPMNRDEHRETSNWYKYLNDDFILVCENAGFNPMQTFEKLKRYNLIKKGIIWNYTANGKRKFADVAPIN