 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027963 Open in IMG/M |
| Scaffold ID | Ga0209400_1027460 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3221 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004111 | Metagenome / Metatranscriptome | 452 | Y |
| F005175 | Metagenome / Metatranscriptome | 409 | Y |
| F011150 | Metagenome / Metatranscriptome | 294 | Y |
| F013409 | Metagenome / Metatranscriptome | 271 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209400_10274601 | F004111 | N/A | MKEKIKQVNELCAANGAYINQHGKKTVSAWSKVKYFREVFGTEFGMNTMIVEHSDRYVIVKCLIMGYDPERIIATGYSKQFRDKPGYLEIAETFATTRALSFFGICLEDLTSKEEYEDLEIPVQPMNGKDTTSAAIRYDDGIILELTKKINYAPHTAKLDFLWRANKDLLNQIKIKDLATYNSILQRFNSKRDEITTQNE |
| Ga0209400_10274602 | F013409 | N/A | MKVILMLIMMNGTVYNLGYQVESYDTRTCDKLFDSVTYKGKTSGKNKQGIFYKSKEVFAYSCSIEKTTKGNNERKNKTG |
| Ga0209400_10274603 | F011150 | N/A | MCRIMDINWYHKQHHKIREQFRHDIIMRKLKEKEDKEFKNMFIKIFLIIVVALLLLTLIA |
| Ga0209400_10274607 | F005175 | AGG | MIDQELHVEDVIEMYNEKIIILKKEIDRLNEEVQVLNMELMKERSKNLGKI |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |