NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209400_1019330

Scaffold Ga0209400_1019330


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1019330 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4048
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053831Metagenome / Metatranscriptome140N
F060634Metagenome132N
F074452Metagenome / Metatranscriptome119N
F080943Metagenome / Metatranscriptome114N
F083781Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_10193301F053831N/AMNHWQKLNYLGDKCKPFHIRVDYCDEVVDFRDMYRFDDAVGAEWIDQTEKEIEDGYKYWVILRARVFLAGIEIGSHSLGGLLFDNTDQMESMMQSDFEDIIEEAVSVARHNLKQMADAMQERVTA
Ga0209400_101933011F074452GGAMIPDNKSFGRHGGGRLGTDPFVRAEISETQRAQDYWEMSYVDEGNRIRYRLSCVLVEEEILDLLYCHGHITADQQTATINQARRTDDK
Ga0209400_101933012F080943AGGAGMISDETKVRLRELEGQRITLEDELDRLAYTNNFARIAELEGELFDVKDSIKKITAGHWFEDISRAELQKEESTLQ
Ga0209400_101933013F083781GGAGGMKHINIEKFQKEAIDLAKTSNGNRPSFTGGSLYAEMIDQDHAELLRADLEDFTNANWGDGTKTSPYSTSVKMYKLADQNGRTEFVYDFVPSATAEDLPPEVDMMLCLEAEIARGK
Ga0209400_10193305F060634N/AMIDFILGIFAVIGFLAFYAYIGYWFLDLKALPAEHWVSRAADRVGSFFGGIWAPMRWKTRRLDIRLLLVIDNLVMRLTNIDFVLLSKRLWTGVILFMSKLKKLFFERNEDKR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.