NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1017862

Scaffold Ga0209400_1017862


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1017862 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4244
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006842Metagenome363Y
F011646Metagenome / Metatranscriptome288Y
F011756Metagenome / Metatranscriptome287Y
F018703Metagenome233Y
F022400Metagenome214Y
F029021Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_101786211F011756GAGVSEPRYLSGDEFALSGGYEELANCNECNVLFDQVEYRSDTCSECEDKRVMREKESK
Ga0209400_101786212F011646AGGAGVSNVLELRNGALKRIIFYEVSDAQNLAIWGGESPSEALKWYRESPLDSKIWVSEWLTDEEDAKEVSPQIEITSIVLSTIANCMERWSK
Ga0209400_101786213F018703AGGTGGMSKTERRVETAKAQAVRQRNYRRARDRALARLGNDYPNVYRAYLEEEIEADEKMGKKWIDITGRTKSSSSRSR
Ga0209400_101786214F022400AGTAGGMVLSQTGRQHKMRKTAIESSQRTTLRLVSGGVGERASAYSPFGPVRAGLITTQRTSEDQVLTELLNSLERKIAELSIRSCEVLNIFLSDTKHLVRHTSSFSNTDTTDSI
Ga0209400_10178627F006842GGAGMKATPVICGDHLVPISECDCLSYMREIESSAKRLIQLAKEREEMK
Ga0209400_10178629F029021GGAGGMKELCQFCGWEIARVDWYHRYNNKLICDNCVMDTMSERERERAI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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