Scaffold Ga0209400_1015283

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1015283
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4681
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016365	Metagenome / Metatranscriptome	247	Y
F082595	Metagenome / Metatranscriptome	113	Y
F085620	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_10152833	F085620	GGA	MERRPHFIERFFDGIWDGFTGATEWLKDVVDTQPWTHVLLGIASWFVVVWLKEQSFLFHLAWIAWIWYWLVILGAPFRIGSRY
Ga0209400_10152835	F082595	GAG	MTIPMKTFRFQVLINNQLPSIIVEQRAMNVNQATQAVQAQYGSESRVQFYGMVNDKD
Ga0209400_10152839	F016365	AGAAGG	MNDMIKITLATAAVIYGMTAPLPANEAVKETQDSINKWYETVSTSVSQDFTALGVTVSNMPEKISLGVSNFVDETVAYQKESWAKTLTFEQEKQNWETIKGWFTPATEGEKK