Scaffold Ga0209400_1012395

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1012395
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5321
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011756	Metagenome / Metatranscriptome	287	Y
F018703	Metagenome	233	Y
F029021	Metagenome	189	Y
F029678	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_101239512	F006842	AGGAG	MKATPAICGDHLVPISECDCLSYMREIESSAKRLIQLAKEREEMK
Ga0209400_101239513	F029021	GAGG	MKDLCQFCGWEIARVDWYHRYNDKLICDNCVMDTMSEREREGAL
Ga0209400_101239515	F029678	AGGAGG	MSRVKGFIIFNQETGQKMATLLLTIPIGSTVEAYEKAGHNVTWGWEEVASE
Ga0209400_101239516	F011756	GAGG	VSEPRYLSGDEFALSGGYEELINCKECAVEYDRTEYQSDTCSDCEDKRVAREKESK
Ga0209400_101239518	F018703	AGGTGG	LSNTERRIETAKAQAVRQRNYRRARDRALARLGNDYPNVYRAYLEEEIEADEKMGKKWLDISGNTKSARSRSK