Scaffold Ga0209400_1008988

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1008988
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6491
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039484	Metagenome	163	N
F055733	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_10089883	F039484	GAGG	MILKNPDKLLKQWIPTTDGNLWFVDDVSVTMDSHGTAYIFRCIIELPVMSSPNQQYYHSTRRVHKEVRLRLTETDYGKNNVYSVSTDEKVWRGYCKDIDTMNKFISVLADLLPNTDNL
Ga0209400_10089886	F055733	GGA	MTYLKTISMTPIIYMVQTMVWIAHNDRKRADTISKQVTRVGEVNGLKYIVIENKED