Scaffold Ga0209400_1008871

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1008871
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6545
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035636	Metagenome / Metatranscriptome	171	Y
F065527	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_10088711	F035636	N/A	LTSVTGAVADAQDMQKNFKPITMDSPEALKEITSFRSFVQLPEERASQQLYQIDPESYKTAVGLGQQYRQLATQPIGPTTTPETEQLRQAIEDEALNQLRLGSTIGAEERRGYEQSIRAAQTARGNIFGLGPAVQEASQIGAAGEQRKLARYGAAQSFLGSGQSTGDALRADIAFRDALRQNRLGAAANFIGGGPSIYNLANQRTAQQQGAFQNYIQANQPLPGGFNQQPSTYQPFFQAVDQQIPVQLTNAFNQLYRSQADYGASTYGAQIGALSRAETGSQAFGNIASGLGNLFSFSKS
Ga0209400_10088715	F065527	GAG	MKAIITMTLMAMLMASGMAEDEGEVSIGDFAGGVLGKSAIITGRNTAVTSDGKFIYSNGRGFATSGGYYGANGKQVFGNGKLVVKSGSFFYGSSSSWKNGNSYFDGTKSSWITGRQRISD