NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1007875

Scaffold Ga0209400_1007875


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1007875 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7027
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008616Metagenome / Metatranscriptome330Y
F012447Metagenome280Y
F014609Metagenome261Y
F018353Metagenome235N
F030061Metagenome186N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100787512F018353N/AMSKPKAKKTTIELPDVMASELVRIVNTAHEEGKLIVGFVACLELFDGKKKTIKIVANQDMPQHSIFGIINFAAEKYQFTISPDEDEDDDFYDPNWFDGQ
Ga0209400_100787513F014609N/AMINELVGIIGLLVTILVLVIKATAEITKMKSQLFPNGGTSLNDKVTRLQLDVVKIRSTIDSISAELGKPKRKR
Ga0209400_10078752F030061AGTAGGMALSDLRSTLKTALTSNTNYSCYDHVPEIIIPPACLILASDPYLEPMVIGNGKNYYVRLTLEVVSTTYSNPSALKNLEDDIETILGLIPLNYIILSVSSPRIRQTNSTDLLTAEIQLQTAYTG
Ga0209400_10078754F008616AGGMLKLKLRWELETGEVYEEWTRPYELAQAEKELYNNRSIIKILTEESSPSNHLLLFLGHKIQQRVTKKMENIDTWKSKVVDIAAVDFETANFTKPAQSGE
Ga0209400_10078755F012447GAGMGKAISLVPVDKDYRALLRAFGKMDEIAKNDMKKIAQDLAERGAAYAQGSASRAPYNTKQAVAVAESIKVSKSDKAPSFSIGGRAKVGSSAFSAGYVIMGSEFGSKQYKQFPKRSPSQGRGNRGWWLYPAMSRFQPTIAREWLAGYEKVRDAWAGRI
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