Scaffold Ga0209400_1005312

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1005312
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8885
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027776	Metagenome	193	Y
F039985	Metagenome / Metatranscriptome	162	N
F044360	Metagenome	154	Y
F052463	Metagenome	142	N
F056414	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100531211	F044360	AGGAG	MASKKLLETDVYPSDRFKVFEYSLMVEMETAKMEHEKVWGIDRVIDLVDAEFRRKVSAQRERIWEASQARDEERLEKAIKGMIAAYKALTRWATEAGIDQMPKIDCMEYKMGDGSLMVIVRDKQMATWYDQFHKLPVNRSVWTLEELEVVMNSKTLTQVREIKAAIPGTRMIPIQPQGSSGFEDMENDIDISKPFKGGKMFDTKAAERDKNERRK
Ga0209400_100531212	F052463	GGAGG	MPGNPKVRADMALLEDLDAELVLSMFEEGRSKADICRGLGIGRRALDKWIDENDYHSIITRARVEAASHLACETLEIADGMDVDNAQRDVQRIRTRQWLAERWDRKTYGTDKAQAVNISIQGLRMEALRHVEVVEQLSTDATPNLSTE
Ga0209400_10053123	F027776	GGTGG	MKNPLEIEIKKTVFAHLPAVGDFGVIDRADLATILHSACTEVALAGWARGADSVQKRMDHELEILRKELKAAQIELDYAKAN
Ga0209400_10053124	F056414	GGAG	MKLTNYQRSQLKAAACFGCGQIDKVAASLQRENPEAFLRESELDQRDFYHQPMAVHRSYVERFLPRHKSEYSQEQRQIMEQNHYLTTTYQIGVGA
Ga0209400_10053129	F039985	AGGA	MLNLSNNNGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLESVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNECDKAAGNNGGKLPVIEYVNSTAEKVGKGNTRVPNFKLAGWVARPAGMSADGEDFVEPEPAPVRKAAKPAPAPVMDDEEFF