Scaffold Ga0209400

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1004516 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027963 Open in IMG/M

Scaffold ID

Ga0209400_1004516 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9794
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (21.74%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9794

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (21.74%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002287	Metagenome / Metatranscriptome	574	Y
F027829	Metagenome	193	N
F041161	Metagenome / Metatranscriptome	160	N
F079522	Metagenome	115	N
F083616	Metagenome	112	N
F083794	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100451610	F027829	N/A	MAFTNRFEADISPKKTRIDPKAMQQTIDIPIGSNPDTGKTYSFRVYLAVSKMQKKLNYAPTILITITFFKYKLHLQSRDVKAIVSAFKKLSNFIDTASPNLENKLSQELLTYDQWEKEYFERKNMGIIDINREEYKK
Ga0209400_100451611	F079522	GGAG	MNQNVTYGKDRQAIVPYDVAIWWHQAFDVEKSIFNPTYIPADLVEDIHQLQRRSIIKALPDSDPGRKWLILRFFPEGI
Ga0209400_100451622	F083794	N/A	MTATQATKQLLDMGCVFLSIVDIEGNTIVPKQQNKFTTTADIKKQADKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEPVPAIAVNNSAPSRGISDPGAESVLSYRAALDMQNQIATLTAENNRLRDLVEALEGDLADIEEAQPQQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGHSDYDSL
Ga0209400_10045163	F002287	N/A	MSQISKLGYVDNKLGAPSSGQQTTRILFNTIEAPGTTSGLIFFKTFQGLTQGQTNLTQNKLDSMESMVIKTIWLAQFDTAGILNSFGDLRQQTLSIIVGNQTVVKNLPIQFNQALNAQTFDRLHENAAVQTDGYNTPSKFLQVRMPVEIRLLTDIVIPPQVSFEVRVDSNAGVYGTGAVVCALSGYGKIFSAGNTF
Ga0209400_10045168	F083616	N/A	MFLQLHDGPDLPYGLRPFPYPKRSGPMVPVRYAEDPFAPGSPVMQTTPYRLLSGCDQAQVYADFVPQNANGWKVRLDQVSQGQKLVKDYQTLREAKGTGSAPIYGADGTITGFKQASKAEVVAAYIQIGLKALQLAQAGVRAGEASRLRDDAQKLYNENKWGIADVCNQTLVELQNNAQNCYDSLNYWIKDQGTPGKNAGQKRIANRSVVIRQNALLILVKEIEAKGGSFTPGGKGAPVGIAAILALVAGAAFLRF
Ga0209400_10045169	F041161	N/A	MSRQIADSIEFANDFLPAHTTCQEIWYILKDNLIYRNDPPGIELLQSFPSLMEDNYWGIPGAGDCDCFTIAALACAKARNIPARAVIVGNSSQSPTHIYAQLFDGSKFVDFDLVSSSYGTTKAYKNKQIIKLH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209400_1004516

Overview

Ecosystem & Geography

Associated Families

Sequences